ERX664193
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
B-Lymphocyte
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA-FIRST-PUBLIC
2014-11-20T17:01:18Z
ENA-LAST-UPDATE
2018-03-08T16:03:56Z
External Id
SAMEA2033962
INSDC center name
SC
INSDC first public
2014-11-20T17:01:18Z
INSDC last update
2018-03-08T16:03:56Z
INSDC status
public
Submitter Id
GM12489-sc-2011-06-09T13:38:35Z-1162250
common name
human
sample name
GM12489-sc-2011-06-09T13:38:35Z-1162250
scientific_name
Homo sapiens

Sequenced DNA Library

library_name
2919717
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15910553
Reads aligned (%)
95.9
Duplicates removed (%)
14.8
Number of peaks
7613 (qval < 1E-05)

hg19

Number of total reads
15910553
Reads aligned (%)
94.6
Duplicates removed (%)
15.1
Number of peaks
7829 (qval < 1E-05)

Base call quality data from DBCLS SRA